3D structure

PDB id
6O9K (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S initiation complex
Experimental method
ELECTRON MICROSCOPY
Resolution
4 Å

Loop

Sequence
GGAGUACG*UAAAAC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6O9K_145 not in the Motif Atlas
Homologous match to IL_5J7L_038
Geometric discrepancy: 0.1097
The information below is about IL_5J7L_038
Detailed Annotation
8x6 Sarcin-Ricin with inserted Y; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_41756.4
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
Number of instances in this motif group
4

Unit IDs

6O9K|1|a|G|887
6O9K|1|a|G|888
6O9K|1|a|A|889
6O9K|1|a|G|890
6O9K|1|a|U|891
6O9K|1|a|A|892
6O9K|1|a|C|893
6O9K|1|a|G|894
*
6O9K|1|a|U|905
6O9K|1|a|A|906
6O9K|1|a|A|907
6O9K|1|a|A|908
6O9K|1|a|A|909
6O9K|1|a|C|910

Current chains

Chain a
16S rRNA

Nearby chains

Chain l
30S ribosomal protein S12

Coloring options:


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