IL_6O9K_167

3D structure

PDB id

6O9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

6O9K|1|a|A|1493

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O9K_167 not in the Motif Atlas

Geometric match to IL_3TD0_005

Geometric discrepancy: 0.2441

The information below is about IL_3TD0_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

6O9K|1|a|C|1407
6O9K|1|a|A|1408
6O9K|1|a|C|1409
*
6O9K|1|a|G|1491
6O9K|1|a|A|1492
6O9K|1|a|A|1493
6O9K|1|a|G|1494

Current chains

Chain a

16S rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain l

30S ribosomal protein S12

Chain x

mRNA