IL_6O9K_176

3D structure

PDB id

6O9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GGGG*CUUAC

Length

9 nucleotides

Bulged bases

6O9K|1|A|A|896

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O9K_176 not in the Motif Atlas

Geometric match to IL_7A0S_040

Geometric discrepancy: 0.3585

The information below is about IL_7A0S_040

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

6O9K|1|A|G|880
6O9K|1|A|G|881
6O9K|1|A|G|882
6O9K|1|A|G|883
*
6O9K|1|A|C|893
6O9K|1|A|U|894
6O9K|1|A|U|895
6O9K|1|A|A|896
6O9K|1|A|C|897

Current chains

Chain A

23S rRNA

Nearby chains