IL_6OD9_003

3D structure

PDB id

6OD9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of the Fusobacterium ulcerans ZTP riboswitch using an X-ray free-electron laser

Experimental method

X-RAY DIFFRACTION

Resolution

4.1 Å

Loop

Sequence

UGAC*GAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OD9_003 not in the Motif Atlas

Geometric match to IL_5BTP_004

Geometric discrepancy: 0.1052

The information below is about IL_5BTP_004

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.3

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

47

Unit IDs

6OD9|1|B|U|12
6OD9|1|B|G|13
6OD9|1|B|A|14
6OD9|1|B|C|15
*
6OD9|1|B|G|41
6OD9|1|B|A|42
6OD9|1|B|A|43
6OD9|1|B|G|44

Current chains

Chain B

RNA (75-MER)

Nearby chains