IL_6OF1_084
3D structure
- PDB id
- 6OF1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with dirithromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.80A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GGAG*CGCCGGUGAAAUAC
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OF1_084 not in the Motif Atlas
- Homologous match to IL_3U4M_003
- Geometric discrepancy: 0.3883
- The information below is about IL_3U4M_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_75283.2
- Basepair signature
- cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R
- Number of instances in this motif group
- 3
Unit IDs
6OF1|1|1A|G|2124
6OF1|1|1A|G|2125
6OF1|1|1A|A|2126
6OF1|1|1A|G|2127
*
6OF1|1|1A|C|2161
6OF1|1|1A|G|2162
6OF1|1|1A|C|2163
6OF1|1|1A|C|2164
6OF1|1|1A|G|2165
6OF1|1|1A|G|2166
6OF1|1|1A|U|2167
6OF1|1|1A|G|2168
6OF1|1|1A|A|2169
6OF1|1|1A|A|2170
6OF1|1|1A|A|2171
6OF1|1|1A|U|2172
6OF1|1|1A|A|2173
6OF1|1|1A|C|2174
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1y
- Transfer RNA; tRNA
Coloring options: