3D structure

PDB id
6OF1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with dirithromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.80A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.8 Å

Loop

Sequence
GAAACC*GACUGAC
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OF1_132 not in the Motif Atlas
Geometric match to IL_4LFB_019
Geometric discrepancy: 0.0875
The information below is about IL_4LFB_019
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_31561.1
Basepair signature
cWW-L-R-tWH-tWH-L-R-L-cWW
Number of instances in this motif group
1

Unit IDs

6OF1|1|1a|G|450
6OF1|1|1a|A|451
6OF1|1|1a|A|452
6OF1|1|1a|A|453
6OF1|1|1a|C|454
6OF1|1|1a|C|455
*
6OF1|1|1a|G|476
6OF1|1|1a|A|477
6OF1|1|1a|C|479
6OF1|1|1a|U|480
6OF1|1|1a|G|481
6OF1|1|1a|A|482
6OF1|1|1a|C|483

Current chains

Chain 1a
16S Ribosomal RNA

Nearby chains

Chain 1p
30S ribosomal protein S16

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.0785 s