3D structure

PDB id
6OF1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with dirithromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.80A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.8 Å

Loop

Sequence
UGAAAGAC*GGGGAG
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OF1_309 not in the Motif Atlas
Homologous match to IL_4LFB_026
Geometric discrepancy: 0.246
The information below is about IL_4LFB_026
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_78349.3
Basepair signature
cWW-L-R-L-R-L-R-L-cWW-L-L
Number of instances in this motif group
2

Unit IDs

6OF1|1|2a|U|605
6OF1|1|2a|G|606
6OF1|1|2a|A|607
6OF1|1|2a|A|608
6OF1|1|2a|A|609
6OF1|1|2a|G|610
6OF1|1|2a|A|611
6OF1|1|2a|C|612
*
6OF1|1|2a|G|628
6OF1|1|2a|G|629
6OF1|1|2a|G|630
6OF1|1|2a|G|631
6OF1|1|2a|A|632
6OF1|1|2a|G|633

Current chains

Chain 2a
16S Ribosomal RNA

Nearby chains

Chain 2d
30S ribosomal protein S4
Chain 2h
30S ribosomal protein S8
Chain 2p
30S ribosomal protein S16
Chain 2q
30S ribosomal protein S17

Coloring options:


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