IL_6OF6_011

3D structure

PDB id

6OF6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAUCAG*CGACGACG

Length

14 nucleotides

Bulged bases

6OF6|1|QA|U|244, 6OF6|1|QA|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OF6_011 not in the Motif Atlas

Homologous match to IL_6CZR_123

Geometric discrepancy: 0.1065

The information below is about IL_6CZR_123

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.2

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

6

Unit IDs

6OF6|1|QA|C|242
6OF6|1|QA|A|243
6OF6|1|QA|U|244
6OF6|1|QA|C|245
6OF6|1|QA|A|246
6OF6|1|QA|G|247
*
6OF6|1|QA|C|277
6OF6|1|QA|G|278
6OF6|1|QA|A|279
6OF6|1|QA|C|280
6OF6|1|QA|G|281
6OF6|1|QA|A|282
6OF6|1|QA|C|283
6OF6|1|QA|G|284

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QL

30S ribosomal protein S12

Chain QQ

30S ribosomal protein S17