IL_6OF6_034

3D structure

PDB id

6OF6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGAGUACG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OF6_034 not in the Motif Atlas

Homologous match to IL_4LFB_034

Geometric discrepancy: 0.073

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

6OF6|1|QA|G|887
6OF6|1|QA|G|888
6OF6|1|QA|A|889
6OF6|1|QA|G|890
6OF6|1|QA|U|891
6OF6|1|QA|A|892
6OF6|1|QA|C|893
6OF6|1|QA|G|894
*
6OF6|1|QA|U|905
6OF6|1|QA|G|906
6OF6|1|QA|A|907
6OF6|1|QA|A|908
6OF6|1|QA|A|909
6OF6|1|QA|C|910

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QL

30S ribosomal protein S12

Chain QQ

30S ribosomal protein S17