3D structure

PDB id
6OF6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GCA*UUCCC
Length
8 nucleotides
Bulged bases
6OF6|1|QA|C|934
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OF6_037 not in the Motif Atlas
Homologous match to IL_4LFB_037
Geometric discrepancy: 0.1096
The information below is about IL_4LFB_037
Detailed Annotation
Minor groove platform
Broad Annotation
No text annotation
Motif group
IL_47078.3
Basepair signature
cWW-cWS-L-cWW-L
Number of instances in this motif group
4

Unit IDs

6OF6|1|QA|G|933
6OF6|1|QA|C|934
6OF6|1|QA|A|935
*
6OF6|1|QA|U|1380
6OF6|1|QA|U|1381
6OF6|1|QA|C|1382
6OF6|1|QA|C|1383
6OF6|1|QA|C|1384

Current chains

Chain QA
16S rRNA

Nearby chains

Chain QG
30S ribosomal protein S7
Chain QI
30S ribosomal protein S9
Chain QV
Transfer RNA; tRNA
Chain QW
Transfer RNA; tRNA
Chain QX
mRNA

Coloring options:


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