3D structure

PDB id
6OF6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GCCC*GUAAC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OF6_051 not in the Motif Atlas
Geometric match to IL_4V88_464
Geometric discrepancy: 0.1467
The information below is about IL_4V88_464
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_65718.1
Basepair signature
cWW-cSH-cWS-cWW-cWW
Number of instances in this motif group
5

Unit IDs

6OF6|1|QA|G|1401
6OF6|1|QA|C|1402
6OF6|1|QA|C|1403
6OF6|1|QA|C|1404
*
6OF6|1|QA|G|1497
6OF6|1|QA|U|1498
6OF6|1|QA|A|1499
6OF6|1|QA|A|1500
6OF6|1|QA|C|1501

Current chains

Chain QA
16S rRNA

Nearby chains

Chain QL
30S ribosomal protein S12
Chain QV
Transfer RNA; tRNA
Chain QX
mRNA
Chain RA
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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