3D structure

PDB id
6OF6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CGAAAUUCCUUG*CCUG
Length
16 nucleotides
Bulged bases
6OF6|1|RA|A|1938, 6OF6|1|RA|U|1944, 6OF6|1|RA|U|1963
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OF6_132 not in the Motif Atlas
Homologous match to IL_4WF9_077
Geometric discrepancy: 0.1269
The information below is about IL_4WF9_077
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_42218.2
Basepair signature
cWW-L-R-cHW-cWW-L-L-L-R-L
Number of instances in this motif group
5

Unit IDs

6OF6|1|RA|C|1934
6OF6|1|RA|G|1935
6OF6|1|RA|A|1936
6OF6|1|RA|A|1937
6OF6|1|RA|A|1938
6OF6|1|RA|U|1939
6OF6|1|RA|U|1940
6OF6|1|RA|C|1941
6OF6|1|RA|C|1942
6OF6|1|RA|U|1943
6OF6|1|RA|U|1944
6OF6|1|RA|G|1945
*
6OF6|1|RA|C|1961
6OF6|1|RA|C|1962
6OF6|1|RA|U|1963
6OF6|1|RA|G|1964

Current chains

Chain RA
23S rRNA

Nearby chains

Chain QA
Small subunit ribosomal RNA; SSU rRNA
Chain QY
Transfer RNA; tRNA
Chain RD
50S ribosomal protein L2

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