3D structure

PDB id
6OF6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
ACGA*UCUAU
Length
9 nucleotides
Bulged bases
6OF6|1|RA|C|2055, 6OF6|1|RA|C|2612, 6OF6|1|RA|U|2613, 6OF6|1|RA|A|2614
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OF6_134 not in the Motif Atlas
Homologous match to IL_7RQB_079
Geometric discrepancy: 0.1136
The information below is about IL_7RQB_079
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_01206.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
2

Unit IDs

6OF6|1|RA|A|2054
6OF6|1|RA|C|2055
6OF6|1|RA|G|2056
6OF6|1|RA|A|2057
*
6OF6|1|RA|U|2611
6OF6|1|RA|C|2612
6OF6|1|RA|U|2613
6OF6|1|RA|A|2614
6OF6|1|RA|U|2615

Current chains

Chain RA
23S rRNA

Nearby chains

Chain R5
50S ribosomal protein L32
Chain RE
50S ribosomal protein L3
Chain RW
50S ribosomal protein L22

Coloring options:


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