3D structure

PDB id
6OF6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GACAAC*GCUAAUC
Length
13 nucleotides
Bulged bases
6OF6|1|XA|U|173
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OF6_178 not in the Motif Atlas
Homologous match to IL_4LFB_009
Geometric discrepancy: 0.129
The information below is about IL_4LFB_009
Detailed Annotation
tWH-tWH-tHW-tHW
Broad Annotation
No text annotation
Motif group
IL_12745.1
Basepair signature
cWW-tWH-tWH-tHW-tHW-cWW
Number of instances in this motif group
1

Unit IDs

6OF6|1|XA|G|148
6OF6|1|XA|A|149
6OF6|1|XA|C|150
6OF6|1|XA|A|151
6OF6|1|XA|A|152
6OF6|1|XA|C|153
*
6OF6|1|XA|G|168
6OF6|1|XA|C|169
6OF6|1|XA|U|170
6OF6|1|XA|A|171
6OF6|1|XA|A|172
6OF6|1|XA|U|173
6OF6|1|XA|C|174

Current chains

Chain XA
16S rRNA

Nearby chains

Chain XT
30S ribosomal protein S20

Coloring options:


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