IL_6OF6_178

3D structure

PDB id

6OF6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GACAAC*GCUAAUC

Length

13 nucleotides

Bulged bases

6OF6|1|XA|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OF6_178 not in the Motif Atlas

Homologous match to IL_4LFB_009

Geometric discrepancy: 0.129

The information below is about IL_4LFB_009

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_12745.1

Basepair signature

cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

1

Unit IDs

6OF6|1|XA|G|148
6OF6|1|XA|A|149
6OF6|1|XA|C|150
6OF6|1|XA|A|151
6OF6|1|XA|A|152
6OF6|1|XA|C|153
*
6OF6|1|XA|G|168
6OF6|1|XA|C|169
6OF6|1|XA|U|170
6OF6|1|XA|A|171
6OF6|1|XA|A|172
6OF6|1|XA|U|173
6OF6|1|XA|C|174

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XT

30S ribosomal protein S20