IL_6OF6_198

3D structure

PDB id

6OF6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAGAG*UGGU

Length

9 nucleotides

Bulged bases

6OF6|1|XA|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OF6_198 not in the Motif Atlas

Homologous match to IL_4LFB_029

Geometric discrepancy: 0.0711

The information below is about IL_4LFB_029

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6OF6|1|XA|G|662
6OF6|1|XA|A|663
6OF6|1|XA|G|664
6OF6|1|XA|A|665
6OF6|1|XA|G|666
*
6OF6|1|XA|U|740
6OF6|1|XA|G|741
6OF6|1|XA|G|742
6OF6|1|XA|U|743

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XF

30S ribosomal protein S6

Chain XO

30S ribosomal protein S15

Chain XR

30S ribosomal protein S18