3D structure

PDB id
6OF6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GGC*GCUC
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OF6_231 not in the Motif Atlas
Geometric match to IL_4P3T_002
Geometric discrepancy: 0.3428
The information below is about IL_4P3T_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_01472.1
Basepair signature
cWW-L-R-L-cWW
Number of instances in this motif group
5

Unit IDs

6OF6|1|XY|G|3
6OF6|1|XY|G|4
6OF6|1|XY|C|5
*
6OF6|1|XY|G|68
6OF6|1|XY|C|69
6OF6|1|XY|U|70
6OF6|1|XY|C|71

Current chains

Chain XY
A-site tRNAAla(GGC)

Nearby chains

Chain XV
Transfer RNA; tRNA
Chain YA
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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