IL_6OF6_314

3D structure

PDB id

6OF6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GCCUG*CUGGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OF6_314 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.3032

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

6OF6|1|YA|G|2106
6OF6|1|YA|C|2107
6OF6|1|YA|C|2108
6OF6|1|YA|U|2109
6OF6|1|YA|G|2110
*
6OF6|1|YA|C|2179
6OF6|1|YA|U|2180
6OF6|1|YA|G|2181
6OF6|1|YA|G|2182
6OF6|1|YA|C|2183

Current chains

Chain YA

23S rRNA

Nearby chains

Chain XW

Transfer RNA; tRNA