3D structure

PDB id
6OFX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Non-rotated ribosome (Structure I)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GGGGUAG*CGAAUAC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OFX_025 not in the Motif Atlas
Geometric match to IL_5J7L_270
Geometric discrepancy: 0.1212
The information below is about IL_5J7L_270
Detailed Annotation
7x7 Sarcin-Ricin with intercalated A; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_29198.2
Basepair signature
cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
Number of instances in this motif group
4

Unit IDs

6OFX|1|1|G|856
6OFX|1|1|G|857
6OFX|1|1|G|858
6OFX|1|1|G|859
6OFX|1|1|U|860
6OFX|1|1|A|861
6OFX|1|1|G|862
*
6OFX|1|1|C|915
6OFX|1|1|G|916
6OFX|1|1|A|917
6OFX|1|1|A|918
6OFX|1|1|U|919
6OFX|1|1|A|920
6OFX|1|1|C|921

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain 2
5S ribosomal RNA; 5S rRNA
Chain m
50S ribosomal protein L16
Chain w
50S ribosomal protein L27
Chain z
50S ribosomal protein L30

Coloring options:


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