IL_6OFX_053

3D structure

PDB id

6OFX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-rotated ribosome (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUAU*AAAUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OFX_053 not in the Motif Atlas

Homologous match to IL_7A0S_053

Geometric discrepancy: 0.3552

The information below is about IL_7A0S_053

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_99646.2

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6OFX|1|1|C|1437
6OFX|1|1|U|1438
6OFX|1|1|A|1439
6OFX|1|1|U|1440
*
6OFX|1|1|A|1551
6OFX|1|1|A|1552
6OFX|1|1|A|1553
6OFX|1|1|U|1554
6OFX|1|1|G|1555

Current chains

Chain 1

23S ribosomal RNA

Nearby chains