IL_6OFX_098

3D structure

PDB id

6OFX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-rotated ribosome (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OFX_098 not in the Motif Atlas

Geometric match to IL_7RQB_103

Geometric discrepancy: 0.1797

The information below is about IL_7RQB_103

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6OFX|1|1|C|2652
6OFX|1|1|U|2653
6OFX|1|1|A|2654
6OFX|1|1|G|2655
6OFX|1|1|U|2656
6OFX|1|1|A|2657
6OFX|1|1|C|2658
*
6OFX|1|1|G|2663
6OFX|1|1|G|2664
6OFX|1|1|A|2665
6OFX|1|1|C|2666
6OFX|1|1|C|2667
6OFX|1|1|G|2668

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain f

50S ribosomal protein L6