IL_6OFX_145

3D structure

PDB id

6OFX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-rotated ribosome (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGAAUU*AGGAAU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OFX_145 not in the Motif Atlas

Geometric match to IL_4LFB_030

Geometric discrepancy: 0.1339

The information below is about IL_4LFB_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04668.2

Basepair signature

cWW-cWW-cWW-L-R-L-R-cWW

Number of instances in this motif group

8

Unit IDs

6OFX|1|3|A|673
6OFX|1|3|G|674
6OFX|1|3|A|675
6OFX|1|3|A|676
6OFX|1|3|U|677
6OFX|1|3|U|678
*
6OFX|1|3|A|712
6OFX|1|3|G|713
6OFX|1|3|G|714
6OFX|1|3|A|715
6OFX|1|3|A|716
6OFX|1|3|U|717

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain K

30S ribosomal protein S6

Chain P

30S ribosomal protein S11

Chain W

30S ribosomal protein S18

Chain Z

30S ribosomal protein S21

Chain b

50S ribosomal protein L2