IL_6OFX_149

3D structure

PDB id

6OFX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-rotated ribosome (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OFX_149 not in the Motif Atlas

Homologous match to IL_5J7L_038

Geometric discrepancy: 0.0971

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

6OFX|1|3|G|887
6OFX|1|3|G|888
6OFX|1|3|A|889
6OFX|1|3|G|890
6OFX|1|3|U|891
6OFX|1|3|A|892
6OFX|1|3|C|893
6OFX|1|3|G|894
*
6OFX|1|3|U|905
6OFX|1|3|A|906
6OFX|1|3|A|907
6OFX|1|3|A|908
6OFX|1|3|A|909
6OFX|1|3|C|910

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain Q

30S ribosomal protein S12