IL_6OFX_161

3D structure

PDB id

6OFX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-rotated ribosome (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OFX_161 not in the Motif Atlas

Homologous match to IL_4LFB_047

Geometric discrepancy: 0.144

The information below is about IL_4LFB_047

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

6OFX|1|3|G|1061
6OFX|1|3|U|1062
6OFX|1|3|C|1063
*
6OFX|1|3|G|1193
6OFX|1|3|U|1194
6OFX|1|3|C|1195

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain 4

mRNA

Chain H

30S ribosomal protein S3

Chain J

30S ribosomal protein S5

Chain N

30S ribosomal protein S9

Chain O

30S ribosomal protein S10