IL_6OG7_067

3D structure

PDB id

6OG7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UGA codon. Non-rotated ribosome with RF2 bound (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

6OG7|1|1|A|1801, 6OG7|1|1|C|1816, 6OG7|1|1|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OG7_067 not in the Motif Atlas

Homologous match to IL_7A0S_065

Geometric discrepancy: 0.1095

The information below is about IL_7A0S_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

6OG7|1|1|U|1798
6OG7|1|1|G|1799
6OG7|1|1|C|1800
6OG7|1|1|A|1801
6OG7|1|1|A|1802
6OG7|1|1|A|1803
6OG7|1|1|C|1804
*
6OG7|1|1|G|1813
6OG7|1|1|G|1814
6OG7|1|1|A|1815
6OG7|1|1|C|1816
6OG7|1|1|G|1817
6OG7|1|1|U|1818
6OG7|1|1|A|1819
6OG7|1|1|U|1820
6OG7|1|1|A|1821

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 3

Small subunit ribosomal RNA; SSU rRNA

Chain b

50S ribosomal protein L2