IL_6OG7_142

3D structure

PDB id

6OG7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UGA codon. Non-rotated ribosome with RF2 bound (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UC*GAA

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OG7_142 not in the Motif Atlas

Homologous match to IL_5J7L_032

Geometric discrepancy: 0.2219

The information below is about IL_5J7L_032

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

6OG7|1|3|U|659
6OG7|1|3|C|660
*
6OG7|1|3|G|745
6OG7|1|3|A|746
6OG7|1|3|A|747

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain T

30S ribosomal protein S15