3D structure

PDB id
6OGF (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S termination complex with RF2 bound to the UGA codon. Partially rotated ribosome with RF2 bound (Structure III).
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
CUGCGAAG*UGGAG
Length
13 nucleotides
Bulged bases
6OGF|1|1|C|1211
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OGF_044 not in the Motif Atlas
Homologous match to IL_7RQB_047
Geometric discrepancy: 0.1618
The information below is about IL_7RQB_047
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_70923.2
Basepair signature
cWW-tSS-tSH-L-tHS-tHS-cWW
Number of instances in this motif group
28

Unit IDs

6OGF|1|1|C|1208
6OGF|1|1|U|1209
6OGF|1|1|G|1210
6OGF|1|1|C|1211
6OGF|1|1|G|1212
6OGF|1|1|A|1213
6OGF|1|1|A|1214
6OGF|1|1|G|1215
*
6OGF|1|1|U|1234
6OGF|1|1|G|1235
6OGF|1|1|G|1236
6OGF|1|1|A|1237
6OGF|1|1|G|1238

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain q
50S ribosomal protein L20

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1352 s