IL_6OGF_055

3D structure

PDB id

6OGF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UGA codon. Partially rotated ribosome with RF2 bound (Structure III).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGUAG*UGAGG

Length

10 nucleotides

Bulged bases

6OGF|1|1|G|1475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OGF_055 not in the Motif Atlas

Homologous match to IL_5J7L_300

Geometric discrepancy: 0.5911

The information below is about IL_5J7L_300

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_38862.4

Basepair signature

cWW-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6OGF|1|1|U|1474
6OGF|1|1|G|1475
6OGF|1|1|U|1476
6OGF|1|1|A|1477
6OGF|1|1|G|1478
*
6OGF|1|1|U|1513
6OGF|1|1|G|1514
6OGF|1|1|A|1515
6OGF|1|1|G|1516
6OGF|1|1|G|1517

Current chains

Chain 1

23S ribosomal RNA

Nearby chains