3D structure

PDB id
6OGF (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S termination complex with RF2 bound to the UGA codon. Partially rotated ribosome with RF2 bound (Structure III).
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
GGAGUACGG*UUAAAAC
Length
16 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OGF_147 not in the Motif Atlas
Homologous match to IL_6CZR_146
Geometric discrepancy: 0.1517
The information below is about IL_6CZR_146
Detailed Annotation
9x7 Sarcin-Ricin with inserted C; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_68633.1
Basepair signature
cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW-L
Number of instances in this motif group
1

Unit IDs

6OGF|1|3|G|887
6OGF|1|3|G|888
6OGF|1|3|A|889
6OGF|1|3|G|890
6OGF|1|3|U|891
6OGF|1|3|A|892
6OGF|1|3|C|893
6OGF|1|3|G|894
6OGF|1|3|G|895
*
6OGF|1|3|U|904
6OGF|1|3|U|905
6OGF|1|3|A|906
6OGF|1|3|A|907
6OGF|1|3|A|908
6OGF|1|3|A|909
6OGF|1|3|C|910

Current chains

Chain 3
16S ribosomal RNA

Nearby chains

Chain 1
Large subunit ribosomal RNA; LSU rRNA
Chain Q
30S ribosomal protein S12

Coloring options:


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