IL_6OGF_180

3D structure

PDB id

6OGF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UGA codon. Partially rotated ribosome with RF2 bound (Structure III).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGC*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OGF_180 not in the Motif Atlas

Geometric match to IL_4V88_476

Geometric discrepancy: 0.3819

The information below is about IL_4V88_476

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_30342.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

10

Unit IDs

6OGF|1|1|G|1062
6OGF|1|1|G|1063
6OGF|1|1|C|1064
*
6OGF|1|1|G|1074
6OGF|1|1|C|1075
6OGF|1|1|C|1076

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 8

Peptide chain release factor 2