3D structure

PDB id
6OGG (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S termination complex with RF2 bound to the UGA codon. Rotated ribosome with RF2 bound (Structure IV).
Experimental method
ELECTRON MICROSCOPY
Resolution
4.2 Å

Loop

Sequence
UGAAG*UGGAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OGG_019 not in the Motif Atlas
Geometric match to IL_4WF9_024
Geometric discrepancy: 0.2325
The information below is about IL_4WF9_024
Detailed Annotation
Triple sheared
Broad Annotation
No text annotation
Motif group
IL_50730.2
Basepair signature
cWW-tSH-tHS-tHS-cWW
Number of instances in this motif group
19

Unit IDs

6OGG|1|1|U|703
6OGG|1|1|G|704
6OGG|1|1|A|705
6OGG|1|1|A|706
6OGG|1|1|G|707
*
6OGG|1|1|U|724
6OGG|1|1|G|725
6OGG|1|1|G|726
6OGG|1|1|A|727
6OGG|1|1|G|728

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain b
50S ribosomal protein L2

Coloring options:


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