IL_6OGG_064

3D structure

PDB id

6OGG (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UGA codon. Rotated ribosome with RF2 bound (Structure IV).

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

6OGG|1|1|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OGG_064 not in the Motif Atlas

Homologous match to IL_5J7L_309

Geometric discrepancy: 0.5778

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6OGG|1|1|U|1712
6OGG|1|1|A|1713
6OGG|1|1|U|1714
6OGG|1|1|G|1715
6OGG|1|1|U|1716
6OGG|1|1|A|1717
6OGG|1|1|G|1718
*
6OGG|1|1|U|1742
6OGG|1|1|G|1743
6OGG|1|1|A|1744
6OGG|1|1|A|1745
6OGG|1|1|A|1746

Current chains

Chain 1

23S ribosomal RNA

Nearby chains