IL_6OGG_067

3D structure

PDB id

6OGG (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UGA codon. Rotated ribosome with RF2 bound (Structure IV).

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

6OGG|1|1|A|1801, 6OGG|1|1|C|1816, 6OGG|1|1|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OGG_067 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.162

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

6OGG|1|1|U|1798
6OGG|1|1|G|1799
6OGG|1|1|C|1800
6OGG|1|1|A|1801
6OGG|1|1|A|1802
6OGG|1|1|A|1803
6OGG|1|1|C|1804
*
6OGG|1|1|G|1813
6OGG|1|1|G|1814
6OGG|1|1|A|1815
6OGG|1|1|C|1816
6OGG|1|1|G|1817
6OGG|1|1|U|1818
6OGG|1|1|A|1819
6OGG|1|1|U|1820
6OGG|1|1|A|1821

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain b

50S ribosomal protein L2