IL_6OGG_071

3D structure

PDB id

6OGG (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UGA codon. Rotated ribosome with RF2 bound (Structure IV).

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UUAG*CGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OGG_071 not in the Motif Atlas

Homologous match to IL_4WF9_075

Geometric discrepancy: 0.3052

The information below is about IL_4WF9_075

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_77691.5

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

6OGG|1|1|U|1864
6OGG|1|1|U|1865
6OGG|1|1|A|1866
6OGG|1|1|G|1867
*
6OGG|1|1|C|1874
6OGG|1|1|G|1875
6OGG|1|1|A|1876
6OGG|1|1|A|1877
6OGG|1|1|G|1878

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain a

50S ribosomal protein L1