IL_6OGG_089

3D structure

PDB id

6OGG (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UGA codon. Rotated ribosome with RF2 bound (Structure IV).

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CGG*CUGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OGG_089 not in the Motif Atlas

Geometric match to IL_5ML7_010

Geometric discrepancy: 0.2747

The information below is about IL_5ML7_010

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

6OGG|1|1|C|2507
6OGG|1|1|G|2508
6OGG|1|1|G|2509
*
6OGG|1|1|C|2579
6OGG|1|1|U|2580
6OGG|1|1|G|2581
6OGG|1|1|G|2582

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 8

Peptide chain release factor 2

Chain c

50S ribosomal protein L3