IL_6OGG_090

3D structure

PDB id

6OGG (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UGA codon. Rotated ribosome with RF2 bound (Structure IV).

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

6OGG|1|1|G|2576, 6OGG|1|1|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OGG_090 not in the Motif Atlas

Geometric match to IL_4PKD_001

Geometric discrepancy: 0.1908

The information below is about IL_4PKD_001

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

6OGG|1|1|C|2510
6OGG|1|1|U|2511
6OGG|1|1|C|2512
*
6OGG|1|1|G|2574
6OGG|1|1|C|2575
6OGG|1|1|G|2576
6OGG|1|1|A|2577
6OGG|1|1|G|2578

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 8

Peptide chain release factor 2

Chain B

50S ribosomal protein L32

Chain c

50S ribosomal protein L3