IL_6OGG_093

3D structure

PDB id

6OGG (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UGA codon. Rotated ribosome with RF2 bound (Structure IV).

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

AAC*GUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OGG_093 not in the Motif Atlas

Geometric match to IL_4YHW_001

Geometric discrepancy: 0.2057

The information below is about IL_4YHW_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6OGG|1|1|A|2589
6OGG|1|1|A|2590
6OGG|1|1|C|2591
*
6OGG|1|1|G|2603
6OGG|1|1|U|2604
6OGG|1|1|U|2605

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 8

Peptide chain release factor 2

Chain b

50S ribosomal protein L2