IL_6OGG_096

3D structure

PDB id

6OGG (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UGA codon. Rotated ribosome with RF2 bound (Structure IV).

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

6OGG|1|1|G|2655

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OGG_096 not in the Motif Atlas

Homologous match to IL_4WF9_100

Geometric discrepancy: 0.254

The information below is about IL_4WF9_100

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6OGG|1|1|C|2652
6OGG|1|1|U|2653
6OGG|1|1|A|2654
6OGG|1|1|G|2655
6OGG|1|1|U|2656
6OGG|1|1|A|2657
6OGG|1|1|C|2658
*
6OGG|1|1|G|2663
6OGG|1|1|G|2664
6OGG|1|1|A|2665
6OGG|1|1|C|2666
6OGG|1|1|C|2667
6OGG|1|1|G|2668

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain f

50S ribosomal protein L6