3D structure

PDB id
6OGG (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S termination complex with RF2 bound to the UGA codon. Rotated ribosome with RF2 bound (Structure IV).
Experimental method
ELECTRON MICROSCOPY
Resolution
4.2 Å

Loop

Sequence
UCACU*AAA
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OGG_097 not in the Motif Atlas
Homologous match to IL_7A0S_095
Geometric discrepancy: 0.1956
The information below is about IL_7A0S_095
Detailed Annotation
C-loop
Broad Annotation
No text annotation
Motif group
IL_63596.11
Basepair signature
cWW-cWS-cSH-tWH-cWW-L
Number of instances in this motif group
19

Unit IDs

6OGG|1|1|U|2680
6OGG|1|1|C|2681
6OGG|1|1|A|2682
6OGG|1|1|C|2683
6OGG|1|1|U|2684
*
6OGG|1|1|A|2725
6OGG|1|1|A|2726
6OGG|1|1|A|2727

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain c
50S ribosomal protein L3
Chain k
50S ribosomal protein L14
Chain p
50S ribosomal protein L19

Coloring options:


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