IL_6OGG_156
3D structure
- PDB id
- 6OGG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S termination complex with RF2 bound to the UGA codon. Rotated ribosome with RF2 bound (Structure IV).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- GUC*GUC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OGG_156 not in the Motif Atlas
- Geometric match to IL_5J7L_050
- Geometric discrepancy: 0.2226
- The information below is about IL_5J7L_050
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_28037.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 65
Unit IDs
6OGG|1|3|G|1061
6OGG|1|3|U|1062
6OGG|1|3|C|1063
*
6OGG|1|3|G|1193
6OGG|1|3|U|1194
6OGG|1|3|C|1195
Current chains
- Chain 3
- 16S ribosomal RNA
Nearby chains
- Chain 4
- mRNA
- Chain 5
- Transfer RNA; tRNA
- Chain 8
- Peptide chain release factor 2
- Chain H
- 30S ribosomal protein S3
- Chain J
- 30S ribosomal protein S5
- Chain N
- 30S ribosomal protein S9
- Chain O
- 30S ribosomal protein S10
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