IL_6OGG_163
3D structure
- PDB id
- 6OGG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S termination complex with RF2 bound to the UGA codon. Rotated ribosome with RF2 bound (Structure IV).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- CGGAUU*AUGAAG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OGG_163 not in the Motif Atlas
- Geometric match to IL_5J7L_057
- Geometric discrepancy: 0.3887
- The information below is about IL_5J7L_057
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_85536.2
- Basepair signature
- cWW-tSH-L-R-tHS-cWW-cWW
- Number of instances in this motif group
- 8
Unit IDs
6OGG|1|3|C|1303
6OGG|1|3|G|1304
6OGG|1|3|G|1305
6OGG|1|3|A|1306
6OGG|1|3|U|1307
6OGG|1|3|U|1308
*
6OGG|1|3|A|1329
6OGG|1|3|U|1330
6OGG|1|3|G|1331
6OGG|1|3|A|1332
6OGG|1|3|A|1333
6OGG|1|3|G|1334
Current chains
- Chain 3
- 16S ribosomal RNA
Nearby chains
- Chain R
- 30S ribosomal protein S13
- Chain X
- 30S ribosomal protein S19
Coloring options: