IL_6OGG_180
3D structure
- PDB id
- 6OGG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S termination complex with RF2 bound to the UGA codon. Rotated ribosome with RF2 bound (Structure IV).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- GGAACUAGG*CUGUC
- Length
- 14 nucleotides
- Bulged bases
- 6OGG|1|1|G|1992
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OGG_180 not in the Motif Atlas
- Homologous match to IL_4WF9_117
- Geometric discrepancy: 0.1699
- The information below is about IL_4WF9_117
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_80252.1
- Basepair signature
- cWW-tSH-cWW-tHW-R-L-cWW-L-L-R
- Number of instances in this motif group
- 10
Unit IDs
6OGG|1|1|G|1666
6OGG|1|1|G|1667
6OGG|1|1|A|1668
6OGG|1|1|A|1669
6OGG|1|1|C|1670
6OGG|1|1|U|1671
6OGG|1|1|A|1672
6OGG|1|1|G|1673
6OGG|1|1|G|1674
*
6OGG|1|1|C|1990
6OGG|1|1|U|1991
6OGG|1|1|G|1992
6OGG|1|1|U|1993
6OGG|1|1|C|1994
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain c
- 50S ribosomal protein L3
- Chain k
- 50S ribosomal protein L14
Coloring options: