IL_6OGG_183

3D structure

PDB id

6OGG (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UGA codon. Rotated ribosome with RF2 bound (Structure IV).

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GCCUUGAUGUGUAGGAUAGG*CCCUUUAAUGU

Length

31 nucleotides

Bulged bases

6OGG|1|1|C|2103, 6OGG|1|1|C|2104, 6OGG|1|1|G|2107, 6OGG|1|1|U|2111, 6OGG|1|1|G|2112, 6OGG|1|1|U|2113, 6OGG|1|1|A|2114, 6OGG|1|1|G|2115, 6OGG|1|1|G|2116, 6OGG|1|1|U|2118

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OGG|1|1|G|2102
6OGG|1|1|C|2103
6OGG|1|1|C|2104
6OGG|1|1|U|2105
6OGG|1|1|U|2106
6OGG|1|1|G|2107
6OGG|1|1|A|2108
6OGG|1|1|U|2109
6OGG|1|1|G|2110
6OGG|1|1|U|2111
6OGG|1|1|G|2112
6OGG|1|1|U|2113
6OGG|1|1|A|2114
6OGG|1|1|G|2115
6OGG|1|1|G|2116
6OGG|1|1|A|2117
6OGG|1|1|U|2118
6OGG|1|1|A|2119
6OGG|1|1|G|2120
6OGG|1|1|G|2121
*
6OGG|1|1|C|2177
6OGG|1|1|C|2178
6OGG|1|1|C|2179
6OGG|1|1|U|2180
6OGG|1|1|U|2181
6OGG|1|1|U|2182
6OGG|1|1|A|2183
6OGG|1|1|A|2184
6OGG|1|1|U|2185
6OGG|1|1|G|2186
6OGG|1|1|U|2187

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 5

Transfer RNA; tRNA

Chain a

50S ribosomal protein L1

Chain g

50S ribosomal protein L9