IL_6OGI_038

3D structure

PDB id

6OGI (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

6OGI|1|1|U|1033

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OGI_038 not in the Motif Atlas

Homologous match to IL_7RQB_041

Geometric discrepancy: 0.1643

The information below is about IL_7RQB_041

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_43275.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

30

Unit IDs

6OGI|1|1|G|1031
6OGI|1|1|A|1032
6OGI|1|1|U|1033
6OGI|1|1|G|1034
*
6OGI|1|1|C|1121
6OGI|1|1|G|1122
6OGI|1|1|C|1123

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 2

5S ribosomal RNA; 5S rRNA

Chain F

50S ribosomal protein L36

Chain m

50S ribosomal protein L16