IL_6OGI_050

3D structure

PDB id

6OGI (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAGG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OGI_050 not in the Motif Atlas

Homologous match to IL_5J7L_293

Geometric discrepancy: 0.111

The information below is about IL_5J7L_293

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

6OGI|1|1|C|1357
6OGI|1|1|G|1358
6OGI|1|1|A|1359
6OGI|1|1|G|1360
6OGI|1|1|G|1361
*
6OGI|1|1|C|1370
6OGI|1|1|G|1371
6OGI|1|1|U|1372
6OGI|1|1|A|1373
6OGI|1|1|G|1374

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L34

Chain b

50S ribosomal protein L2

Chain x

50S ribosomal protein L28