IL_6OGI_065

3D structure

PDB id

6OGI (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

6OGI|1|1|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OGI_065 not in the Motif Atlas

Homologous match to IL_7RQB_068

Geometric discrepancy: 0.1071

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

6OGI|1|1|C|1686
6OGI|1|1|G|1687
6OGI|1|1|U|1688
6OGI|1|1|A|1689
6OGI|1|1|A|1690
6OGI|1|1|C|1691
*
6OGI|1|1|G|1696
6OGI|1|1|G|1697
6OGI|1|1|A|1698
6OGI|1|1|G|1699
6OGI|1|1|A|1700
6OGI|1|1|A|1701
6OGI|1|1|G|1702

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 3

Small subunit ribosomal RNA; SSU rRNA

Chain b

50S ribosomal protein L2