IL_6OGI_090

3D structure

PDB id

6OGI (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUGA*UGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OGI_090 not in the Motif Atlas

Geometric match to IL_7RQB_093

Geometric discrepancy: 0.1414

The information below is about IL_7RQB_093

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_63450.2

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

8

Unit IDs

6OGI|1|1|C|2456
6OGI|1|1|U|2457
6OGI|1|1|G|2458
6OGI|1|1|A|2459
*
6OGI|1|1|U|2493
6OGI|1|1|G|2494
6OGI|1|1|G|2495

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain m

50S ribosomal protein L16