IL_6OGI_092
3D structure
- PDB id
- 6OGI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CCAAG*CGACG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OGI_092 not in the Motif Atlas
- Homologous match to IL_5J7L_338
- Geometric discrepancy: 0.215
- The information below is about IL_5J7L_338
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_17948.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
6OGI|1|1|C|2466
6OGI|1|1|C|2467
6OGI|1|1|A|2468
6OGI|1|1|A|2469
6OGI|1|1|G|2470
*
6OGI|1|1|C|2480
6OGI|1|1|G|2481
6OGI|1|1|A|2482
6OGI|1|1|C|2483
6OGI|1|1|G|2484
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain F
- 50S ribosomal protein L36
- Chain m
- 50S ribosomal protein L16
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