IL_6OGI_123

3D structure

PDB id

6OGI (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UAGU*AG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OGI_123 not in the Motif Atlas

Homologous match to IL_4LFB_012

Geometric discrepancy: 0.3088

The information below is about IL_4LFB_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22002.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

6OGI|1|3|U|249
6OGI|1|3|A|250
6OGI|1|3|G|251
6OGI|1|3|U|252
*
6OGI|1|3|A|274
6OGI|1|3|G|275

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain V

30S ribosomal protein S17