3D structure

PDB id
6OGI (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
GUGAAAUCCC*GGAACUGC
Length
18 nucleotides
Bulged bases
6OGI|1|3|U|632
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OGI_137 not in the Motif Atlas
Homologous match to IL_6CZR_138
Geometric discrepancy: 0.4339
The information below is about IL_6CZR_138
Detailed Annotation
tSH-tHW-tHH-tHS
Broad Annotation
No text annotation
Motif group
IL_57273.1
Basepair signature
cWW-cWW-L-R-L-R-L-R-L-R-L-R-cWW
Number of instances in this motif group
2

Unit IDs

6OGI|1|3|G|604
6OGI|1|3|U|605
6OGI|1|3|G|606
6OGI|1|3|A|607
6OGI|1|3|A|608
6OGI|1|3|A|609
6OGI|1|3|U|610
6OGI|1|3|C|611
6OGI|1|3|C|612
6OGI|1|3|C|613
*
6OGI|1|3|G|627
6OGI|1|3|G|628
6OGI|1|3|A|629
6OGI|1|3|A|630
6OGI|1|3|C|631
6OGI|1|3|U|632
6OGI|1|3|G|633
6OGI|1|3|C|634

Current chains

Chain 3
16S ribosomal RNA

Nearby chains

Chain I
30S ribosomal protein S4
Chain M
30S ribosomal protein S8
Chain U
30S ribosomal protein S16
Chain V
30S ribosomal protein S17

Coloring options:


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