IL_6OGI_142

3D structure

PDB id

6OGI (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCAAAC*GGUAGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OGI_142 not in the Motif Atlas

Geometric match to IL_8ZA4_001

Geometric discrepancy: 0.2786

The information below is about IL_8ZA4_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76308.6

Basepair signature

cWW-tSH-tHW-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6OGI|1|3|G|778
6OGI|1|3|C|779
6OGI|1|3|A|780
6OGI|1|3|A|781
6OGI|1|3|A|782
6OGI|1|3|C|783
*
6OGI|1|3|G|799
6OGI|1|3|G|800
6OGI|1|3|U|801
6OGI|1|3|A|802
6OGI|1|3|G|803
6OGI|1|3|U|804

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain P

30S ribosomal protein S11

Chain Z

30S ribosomal protein S21